X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP729326-29% (v/v) polyethylene glycol 3350, 0.10M Bis-Tris HCl
Crystal Properties
Matthews coefficientSolvent content
2.0539.93

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 133.929α = 90
b = 80.229β = 108.533
c = 135.159γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 9M2018-02-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSPRING-8 BEAMLINE BL32XU0.979400SPring-8BL32XU

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.1697745.044497.610.1090.9988.483.514132729.0333207286
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.172.2480.78

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUEPhm72.169775298345.04438562631.36056709229140574726597.62693501680.1826413348880.1797902583070.23522227364331.2130249912
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
f_dihedral_angle_d18.4149645278
f_angle_d0.700175980492
f_chiral_restr0.0519235466421
f_bond_d0.00445539683493
f_plane_restr0.00412921533801
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms22889
Nucleic Acid Atoms
Solvent Atoms1226
Heterogen Atoms50

Software

Software
Software NamePurpose
XDSdata reduction
XDSdata scaling
pointlessdata scaling
Aimlessdata scaling
PHASERphasing
Cootmodel building
PHENIXrefinement