☰ Navigation Tabs
Structure of the transmembrane domain of human PD-L1
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D HNCO 20 mM MES, 30 mM DMPC, 60 mM DHPC 90% H2O/10% D2O 20 mM 6.0 1 atm 310 Bruker AVANCE 600 2 3D HNCA 20 mM MES, 30 mM DMPC, 60 mM DHPC 90% H2O/10% D2O 20 mM 6.0 1 atm 310 Bruker AVANCE 600 3 3D HN(CO)CA 20 mM MES, 30 mM DMPC, 60 mM DHPC 90% H2O/10% D2O 20 mM 6.0 1 atm 310 Bruker AVANCE 600 4 3D HNCACB 20 mM MES, 30 mM DMPC, 60 mM DHPC 90% H2O/10% D2O 20 mM 6.0 1 atm 310 Bruker AVANCE 600 5 3D HN(CA)CO 20 mM MES, 30 mM DMPC, 60 mM DHPC 90% H2O/10% D2O 20 mM 6.0 1 atm 310 Bruker AVANCE 600 7 3D 1H-15N NOESY 20 mM MES, 30 mM [U-2H] DMPC, 60 mM [U-2H] DHPC 90% H2O/10% D2O 20 mM 6.0 1 atm 310 Bruker AVANCE 900 6 3D 1H-13C NOESY 20 mM MES, 30 mM [U-2H] DMPC, 60 mM [U-2H] DHPC 90% H2O/10% D2O 20 mM 6.0 1 atm 310 Bruker AVANCE 900
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600 2 Bruker AVANCE 900
NMR Refinement Method Details Software simulated annealing X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 15 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 2 structure calculation X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 3 chemical shift assignment XEASY Bartels et al. 5 collection TopSpin Bruker Biospin 6 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 7 peak picking XEASY Bartels et al.