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Structure of NorC transporter in an outward-open conformation in complex with a single-chain Indian camelid antibody
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293 0.1M HEPES, pH 6.0, 50 mM NaCl, 35.7% PEG 600, 57.1 mM CaCl2, 10 mM YtCl2, 6.66 mM CHAPSO
Crystal Properties Matthews coefficient Solvent content 4.26 72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.212 α = 90 b = 139.875 β = 106.03 c = 118.034 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2019-08-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.97910 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.65 49.18 99.1 0.196 0.048 0.997 8 17.5 24592 141.41
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.65 3.9 95.2 4.14 1.05 0.563 1 16.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 3.65 48.96 23409 1153 99.06 0.29839 0.29746 0.3039 0.31763 0.3269 RANDOM 144.168
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.66 -12.5 4.91 4.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.677 r_dihedral_angle_3_deg 15.884 r_long_range_B_refined 11.273 r_long_range_B_other 11.273 r_dihedral_angle_4_deg 9.981 r_mcangle_it 6.877 r_mcangle_other 6.876 r_scangle_other 5.762 r_dihedral_angle_1_deg 5.247 r_mcbond_it 3.994
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.677 r_dihedral_angle_3_deg 15.884 r_long_range_B_refined 11.273 r_long_range_B_other 11.273 r_dihedral_angle_4_deg 9.981 r_mcangle_it 6.877 r_mcangle_other 6.876 r_scangle_other 5.762 r_dihedral_angle_1_deg 5.247 r_mcbond_it 3.994 r_mcbond_other 3.99 r_scbond_it 3.227 r_scbond_other 3.223 r_angle_refined_deg 1.213 r_angle_other_deg 1.059 r_chiral_restr 0.033 r_bond_refined_d 0.002 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7573 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement XDS data reduction ADDREF data scaling CRANK2 phasing