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Crystal structure of selenomethionine-derived human BFK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 289 0.1 M Bis-Tris pH 5.5, 28% PEG 3350
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 116.156 α = 90 b = 116.156 β = 90 c = 27.679 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2019-11-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 0.97918 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.45 50 99.1 0.071 0.997 12.32 3.1 15406
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.45 2.49 90.9 0.784 0.803 1.06 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 2.45 38.05 12693 629 82.561 0.214 0.2124 0.2174 0.2538 0.2502 39.143
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.183 0.092 0.183 -0.595
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.756 r_dihedral_angle_3_deg 13.018 r_dihedral_angle_4_deg 8.221 r_dihedral_angle_1_deg 3.639 r_lrange_it 3.199 r_lrange_other 3.199 r_scangle_it 2.146 r_scangle_other 2.146 r_mcangle_it 1.723 r_mcangle_other 1.722
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.756 r_dihedral_angle_3_deg 13.018 r_dihedral_angle_4_deg 8.221 r_dihedral_angle_1_deg 3.639 r_lrange_it 3.199 r_lrange_other 3.199 r_scangle_it 2.146 r_scangle_other 2.146 r_mcangle_it 1.723 r_mcangle_other 1.722 r_scbond_it 1.378 r_scbond_other 1.378 r_angle_refined_deg 1.119 r_angle_other_deg 1.056 r_mcbond_it 0.964 r_mcbond_other 0.964 r_nbd_refined 0.159 r_symmetry_nbd_other 0.154 r_nbd_other 0.136 r_nbtor_refined 0.133 r_xyhbond_nbd_refined 0.105 r_symmetry_nbd_refined 0.084 r_symmetry_nbtor_other 0.082 r_symmetry_xyhbond_nbd_refined 0.071 r_chiral_restr 0.024 r_bond_refined_d 0.009 r_bond_other_d 0.005 r_gen_planes_refined 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3310 Nucleic Acid Atoms Solvent Atoms 19 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling AutoSol phasing