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Crystal structure of human BFK
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7CCM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 289 0.1 M Bis-Tris pH 5.5, 28% PEG 3350
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 116.5 α = 90 b = 116.5 β = 90 c = 27.63 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2020-06-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 0.97957 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 30 99.3 0.077 0.998 13.5 3.6 11459
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.77 98.1 0.809 0.599 1.96 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 7CCM 2.7 29.125 11434 578 99.331 0.16 0.1579 0.17 0.1901 0.2037 64.349
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 17.984 17.984 -35.968
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.774 r_dihedral_angle_3_deg 13.816 r_dihedral_angle_4_deg 10.14 r_dihedral_angle_1_deg 4.066 r_lrange_it 2.829 r_lrange_other 2.828 r_mcangle_it 1.227 r_mcangle_other 1.227 r_angle_refined_deg 1.167 r_angle_other_deg 1.035
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.774 r_dihedral_angle_3_deg 13.816 r_dihedral_angle_4_deg 10.14 r_dihedral_angle_1_deg 4.066 r_lrange_it 2.829 r_lrange_other 2.828 r_mcangle_it 1.227 r_mcangle_other 1.227 r_angle_refined_deg 1.167 r_angle_other_deg 1.035 r_scangle_it 0.669 r_scangle_other 0.669 r_mcbond_it 0.647 r_mcbond_other 0.647 r_scbond_it 0.311 r_scbond_other 0.311 r_symmetry_nbd_other 0.157 r_nbd_refined 0.156 r_nbd_other 0.138 r_nbtor_refined 0.133 r_xyhbond_nbd_refined 0.115 r_symmetry_nbd_refined 0.081 r_symmetry_nbtor_other 0.078 r_symmetry_xyhbond_nbd_refined 0.052 r_chiral_restr 0.022 r_bond_refined_d 0.005 r_bond_other_d 0.003 r_gen_planes_refined 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3306 Nucleic Acid Atoms Solvent Atoms 11 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing