7BWB

Bombyx mori GH32 beta-fructofuranosidase BmSUC1

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	6.4	293	13% PEG 3350, 40 mM citric acid, 60 mM Bis-Tris propane

Crystal Properties
Matthews coefficient	Solvent content
2.53	51.33

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 94.752	α = 90
b = 119.308	β = 90
c = 100.275	γ = 90

Symmetry
Space Group	C 2 2 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS3 S 6M		2020-03-06	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	PHOTON FACTORY BEAMLINE BL-5A	1	Photon Factory	BL-5A

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.8	50	99.9	0.051	17	6		52834

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.8	1.9			0.607	2.5

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1UYP	1.8	42.872	52623	2559	99.518	0.17	0.1678	0.2131	39.454

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
4.91			-1.012		-3.899

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	36.94
r_dihedral_angle_3_deg	13.227
r_dihedral_angle_4_deg	12.985
r_dihedral_angle_1_deg	8.546
r_lrange_it	2.876
r_lrange_other	2.869
r_scangle_it	2.411
r_scangle_other	2.411
r_mcangle_it	2.192
r_mcangle_other	2.192
r_rigid_bond_restr	2.096
r_scbond_it	1.922
r_scbond_other	1.922
r_mcbond_it	1.71
r_mcbond_other	1.71
r_angle_refined_deg	1.523
r_angle_other_deg	1.292
r_symmetry_xyhbond_nbd_refined	0.274
r_nbd_other	0.227
r_nbd_refined	0.191
r_symmetry_nbd_other	0.19
r_nbtor_refined	0.172
r_xyhbond_nbd_refined	0.119
r_symmetry_nbd_refined	0.081
r_symmetry_nbtor_other	0.075
r_chiral_restr	0.065
r_bond_refined_d	0.009
r_gen_planes_refined	0.007
r_bond_other_d	0.003
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	3777
Nucleic Acid Atoms
Solvent Atoms	188
Heterogen Atoms

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
SCALA	data scaling
MrBUMP	phasing