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Gene-engineered variant of FusionRed with Trp based chromophore - 2.1A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other FusionRed
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 2mkl of protein solution 20 mM Tris pH 8.0 200mM NaCl mixed with 2mkl of 0.2M NaCl, 0.1M Bis-Tris 6.5, 25% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.07 40.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.846 α = 90 b = 92.234 β = 111.83 c = 57.997 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2015-07-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.09 30 99.6 0.066 0.077 0.039 7.9 3.7 26662
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.18 96.1 0.362 0.438 0.243 0.891 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT FusionRed 2.09 28.99 25302 1339 98.69 0.1666 0.1632 0.1731 0.2297 0.1678 RANDOM 48.218
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.05 1.22 1.94 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.045 r_dihedral_angle_3_deg 16.072 r_dihedral_angle_4_deg 14.747 r_dihedral_angle_1_deg 6.958 r_angle_refined_deg 2.064 r_angle_other_deg 1.643 r_chiral_restr 0.103 r_gen_planes_other 0.022 r_bond_refined_d 0.017 r_gen_planes_refined 0.014
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.045 r_dihedral_angle_3_deg 16.072 r_dihedral_angle_4_deg 14.747 r_dihedral_angle_1_deg 6.958 r_angle_refined_deg 2.064 r_angle_other_deg 1.643 r_chiral_restr 0.103 r_gen_planes_other 0.022 r_bond_refined_d 0.017 r_gen_planes_refined 0.014 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3546 Nucleic Acid Atoms Solvent Atoms 142 Heterogen Atoms
Software Software Software Name Purpose SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction REFMAC phasing