7BBO

Crystal Structure of the second bromodomain of Pleckstrin homology domain interacting protein (PHIP) in space group P212121

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	7.5	277	20% PEG6000 -- 10% ethylene glycol -- 0.1M tris pH 7.5 -- 0.1M calcium chloride

Crystal Properties
Matthews coefficient	Solvent content
2.04	39.72

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 47.726	α = 90
b = 56.477	β = 90
c = 91.79	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 2M		2015-04-16	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I04-1	0.9173	Diamond	I04-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.32	56.48	99.9	0.999	11.1	6		59052

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.32	1.37			0.577

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	3MB3	1.32	48.148	58868	2843	99.71	0.188	0.1859	0.2255	21.669

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
2.64			-1.903		-0.737

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	25.54
r_dihedral_angle_4_deg	14.148
r_dihedral_angle_3_deg	12.728
r_rigid_bond_restr	6.557
r_dihedral_angle_1_deg	5.592
r_lrange_it	4.295
r_lrange_other	4.222
r_scangle_it	4.208
r_scangle_other	4.207
r_scbond_it	3.261
r_scbond_other	3.261
r_mcangle_other	3.018
r_mcangle_it	3.015
r_mcbond_other	2.354
r_mcbond_it	2.347
r_angle_other_deg	1.677
r_angle_refined_deg	1.652
r_nbd_refined	0.222
r_nbd_other	0.21
r_symmetry_nbd_other	0.202
r_xyhbond_nbd_refined	0.188
r_nbtor_refined	0.183
r_symmetry_nbd_refined	0.165
r_symmetry_xyhbond_nbd_refined	0.126
r_chiral_restr	0.098
r_metal_ion_refined	0.096
r_symmetry_nbtor_other	0.076
r_bond_other_d	0.014
r_bond_refined_d	0.011
r_gen_planes_refined	0.01
r_gen_planes_other	0.008

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2032
Nucleic Acid Atoms
Solvent Atoms	196
Heterogen Atoms	39

Software

Software
Software Name	Purpose
REFMAC	refinement
DIALS	data reduction
Aimless	data scaling
PHASER	phasing