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Streptococcal High Identity Repeats in Tandem (SHIRT) domains 3-4 from cell surface protein SGO_0707
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other Shirt R3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 277 65% MPD, 0.1 M Tris pH 8
Crystal Properties Matthews coefficient Solvent content 2.4 48.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 24.127 α = 90 b = 37.155 β = 95.84 c = 101.14 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2015-12-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.976 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 34.88 99.9 0.066 0.998 8.9 4 39416 10.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.37 99.6 0.96 0.562 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT Shirt R3 1.35 34.85 37511 1892 99.91 0.1357 0.13385 0.1353 0.17027 0.17 RANDOM 18.017
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.28 -0.12 -0.21 0.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.791 r_dihedral_angle_3_deg 10.56 r_rigid_bond_restr 6.471 r_dihedral_angle_1_deg 6.462 r_scangle_other 5.161 r_scbond_it 4.387 r_angle_refined_deg 2.117 r_mcbond_it 2.106 r_mcbond_other 2.093 r_angle_other_deg 1.618
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.791 r_dihedral_angle_3_deg 10.56 r_rigid_bond_restr 6.471 r_dihedral_angle_1_deg 6.462 r_scangle_other 5.161 r_scbond_it 4.387 r_angle_refined_deg 2.117 r_mcbond_it 2.106 r_mcbond_other 2.093 r_angle_other_deg 1.618 r_chiral_restr 0.096 r_bond_refined_d 0.018 r_gen_planes_refined 0.012 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1288 Nucleic Acid Atoms Solvent Atoms 195 Heterogen Atoms 17
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PDB_EXTRACT data extraction XDS data reduction PHASER phasing