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Crystal structure of rsGCamP1.3 in the ON state
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6YA9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 292 0.2 M Na Formate, 0.1 M BTP pH 8.5, 22% PEG 3350
Crystal Properties Matthews coefficient Solvent content 3.76 67.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 121.852 α = 90 b = 121.852 β = 90 c = 96.416 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M-F 2020-09-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 0.9999 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.04 50 99.9 0.997 9.7 10.6 46902 44
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.04 2.16 0.484 1.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6YA9 2.04 47.44 44554 2348 99.93 0.167 0.1649 0.1732 0.2067 0.211 RANDOM 41.528
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.21 -0.21 0.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.896 r_dihedral_angle_4_deg 18.724 r_dihedral_angle_3_deg 15.954 r_dihedral_angle_1_deg 6.865 r_angle_refined_deg 1.78 r_angle_other_deg 1.384 r_chiral_restr 0.078 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_gen_planes_other 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.896 r_dihedral_angle_4_deg 18.724 r_dihedral_angle_3_deg 15.954 r_dihedral_angle_1_deg 6.865 r_angle_refined_deg 1.78 r_angle_other_deg 1.384 r_chiral_restr 0.078 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3177 Nucleic Acid Atoms Solvent Atoms 346 Heterogen Atoms 95
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction SCALA data scaling MOLREP phasing