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IL-17A in complex with small molecule modulators
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4HR9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 PEG 10000, isopropanol, sodium citrate
Crystal Properties Matthews coefficient Solvent content 5.63 78.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 165.006 α = 90 b = 119.043 β = 90.54 c = 54.29 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2016-03-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.97949 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.18 28.87 97.8 0.098 0.997 9.2 2.9 17232
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.18 3.4 1.184 0.338
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4HR9 3.18 28.86 16355 795 97.16 0.20461 0.20351 0.22 0.22704 0.2426 RANDOM 108.108
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.95 -0.47 1.3 -2.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.582 r_dihedral_angle_3_deg 22.063 r_dihedral_angle_4_deg 20.772 r_long_range_B_other 17.147 r_long_range_B_refined 17.146 r_scangle_other 12.044 r_mcangle_it 11.494 r_mcangle_other 11.493 r_dihedral_angle_1_deg 8.567 r_scbond_it 7.86
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.582 r_dihedral_angle_3_deg 22.063 r_dihedral_angle_4_deg 20.772 r_long_range_B_other 17.147 r_long_range_B_refined 17.146 r_scangle_other 12.044 r_mcangle_it 11.494 r_mcangle_other 11.493 r_dihedral_angle_1_deg 8.567 r_scbond_it 7.86 r_scbond_other 7.858 r_mcbond_it 7.503 r_mcbond_other 7.487 r_angle_refined_deg 2.042 r_angle_other_deg 1.596 r_chiral_restr 0.113 r_bond_refined_d 0.016 r_gen_planes_refined 0.011 r_gen_planes_other 0.008 r_bond_other_d 0.007 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3309 Nucleic Acid Atoms Solvent Atoms 10 Heterogen Atoms 116
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing