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IL-17A in complex with small molecule modulators
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other in house model
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 PEG 10 000, isopropanol, sodium citrate
Crystal Properties Matthews coefficient Solvent content 3.35 63.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.36 α = 90 b = 85.2 β = 90 c = 118.22 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2019-12-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.97625 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.48 52.84 98.9 1 24 6.79 12251
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.48 2.52 0.326
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT in house model 2.48 52.84 11628 618 98.86 0.21262 0.21037 0.2108 0.25469 0.2615 RANDOM 105.816
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.26 0.97 0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.224 r_dihedral_angle_4_deg 25.668 r_dihedral_angle_3_deg 21.198 r_long_range_B_other 14.97 r_long_range_B_refined 14.961 r_scangle_other 11.186 r_mcangle_other 9.735 r_mcangle_it 9.734 r_dihedral_angle_1_deg 8.916 r_scbond_it 7.893
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.224 r_dihedral_angle_4_deg 25.668 r_dihedral_angle_3_deg 21.198 r_long_range_B_other 14.97 r_long_range_B_refined 14.961 r_scangle_other 11.186 r_mcangle_other 9.735 r_mcangle_it 9.734 r_dihedral_angle_1_deg 8.916 r_scbond_it 7.893 r_scbond_other 7.893 r_mcbond_it 6.973 r_mcbond_other 6.97 r_angle_refined_deg 1.988 r_angle_other_deg 1.429 r_chiral_restr 0.083 r_bond_refined_d 0.013 r_gen_planes_refined 0.009 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1596 Nucleic Acid Atoms Solvent Atoms 44 Heterogen Atoms 35
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling REFMAC phasing