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AceL NrdHF class 3 split intein GSH linked splice inactive variant - C124A, N146A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 305 PEG3350 25 %, Glycerol 20 %, 0.1 M MIB
Crystal Properties Matthews coefficient Solvent content 1.97 37.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.504 α = 65.45 b = 45.06 β = 77.51 c = 46.281 γ = 69.35
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 2M 2020-01-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 1.5498 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 41.96 93.6 0.09 0.107 0.058 0.993 7.1 3.4 20988
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.94 89.1 0.411 0.49 0.262 0.856 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 41.96 19917 1070 93.63 0.2272 0.2257 0.2303 0.2531 0.2551 RANDOM 15.512
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.46 1.64 2.02 0.73 -0.16 0.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.441 r_sphericity_bonded 24.096 r_dihedral_angle_4_deg 14.135 r_dihedral_angle_3_deg 13.844 r_dihedral_angle_1_deg 6.444 r_rigid_bond_restr 2.21 r_angle_refined_deg 1.41 r_angle_other_deg 0.726 r_chiral_restr 0.091 r_bond_refined_d 0.009
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.441 r_sphericity_bonded 24.096 r_dihedral_angle_4_deg 14.135 r_dihedral_angle_3_deg 13.844 r_dihedral_angle_1_deg 6.444 r_rigid_bond_restr 2.21 r_angle_refined_deg 1.41 r_angle_other_deg 0.726 r_chiral_restr 0.091 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_sphericity_free
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2440 Nucleic Acid Atoms Solvent Atoms 192 Heterogen Atoms 7
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PDB_EXTRACT data extraction XDS data reduction PHASER phasing