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C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH GSK549
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other in house structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.5 293 30% PEG 300, 0.1M MES buffer pH6.5
Crystal Properties Matthews coefficient Solvent content 2.25 45.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.017 α = 90 b = 52.327 β = 90 c = 32.033 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN A200 2015-03-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.28 42.33 98.4 0.27 0.981 26.4 2.7 5759
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.28 42.33 99.6 0.065 0.943 13.8 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE in house structure 2.282 42.33 5652 258 96.106 0.143 0.1393 0.1497 0.2339 0.2449 23.693
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.042 -0.023 -0.019
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.606 r_dihedral_angle_4_deg 19.525 r_dihedral_angle_3_deg 14.986 r_lrange_it 7.019 r_lrange_other 7.016 r_dihedral_angle_1_deg 5.56 r_scangle_it 4.296 r_scangle_other 4.293 r_mcangle_it 3.183 r_mcangle_other 3.181
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.606 r_dihedral_angle_4_deg 19.525 r_dihedral_angle_3_deg 14.986 r_lrange_it 7.019 r_lrange_other 7.016 r_dihedral_angle_1_deg 5.56 r_scangle_it 4.296 r_scangle_other 4.293 r_mcangle_it 3.183 r_mcangle_other 3.181 r_scbond_it 2.609 r_scbond_other 2.607 r_mcbond_it 1.946 r_mcbond_other 1.909 r_angle_refined_deg 1.475 r_angle_other_deg 1.243 r_symmetry_xyhbond_nbd_refined 0.272 r_xyhbond_nbd_refined 0.197 r_nbd_refined 0.195 r_nbd_other 0.185 r_symmetry_nbd_other 0.175 r_nbtor_refined 0.168 r_symmetry_nbd_refined 0.145 r_symmetry_nbtor_other 0.082 r_chiral_restr 0.071 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 928 Nucleic Acid Atoms Solvent Atoms 166 Heterogen Atoms 46
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling