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CRYSTAL STRUCTURE OF OASS COMPLEXED WITH UPAR INHIBITOR
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OAS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 Drops contained 1 uL of 20 mg/mL StOASS-A mixed with 1 uL of reservoir solution containing 30-31% (w/v) PEG4000, 130-180 mM Li2SO4 (Fluka), 100 mM Tris base pH = 7.0.
Crystal Properties Matthews coefficient Solvent content 2.64 53.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.261 α = 90 b = 96.275 β = 90 c = 140.835 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2018-04-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 5.2R 1 ELETTRA 5.2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 46.648 94.35 0.0286 0.04044 0.0286 0.999 10.89 1.9 214538 10.08
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.243 65.85 0.5601 0.7921 0.5601 0.569 0.72 1.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1OAS 1.2 46.648 214536 10659 94.96 0.155 0.1542 0.1608 0.1787 0.1824 16.357
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.685 2.071 -0.387
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.557 r_dihedral_angle_4_deg 15.49 r_dihedral_angle_3_deg 12.585 r_dihedral_angle_1_deg 6.262 r_rigid_bond_restr 6.148 r_lrange_it 3.268 r_lrange_other 2.974 r_scangle_it 2.674 r_scangle_other 2.674 r_scbond_it 2.324
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.557 r_dihedral_angle_4_deg 15.49 r_dihedral_angle_3_deg 12.585 r_dihedral_angle_1_deg 6.262 r_rigid_bond_restr 6.148 r_lrange_it 3.268 r_lrange_other 2.974 r_scangle_it 2.674 r_scangle_other 2.674 r_scbond_it 2.324 r_scbond_other 2.316 r_chiral_restr_other 1.931 r_mcangle_other 1.89 r_mcangle_it 1.889 r_angle_refined_deg 1.874 r_angle_other_deg 1.574 r_mcbond_it 1.457 r_mcbond_other 1.455 r_symmetry_xyhbond_nbd_other 0.609 r_nbd_refined 0.221 r_symmetry_nbd_other 0.179 r_nbd_other 0.173 r_nbtor_refined 0.169 r_xyhbond_nbd_refined 0.168 r_symmetry_xyhbond_nbd_refined 0.116 r_chiral_restr 0.105 r_ncsr_local_group_1 0.1 r_symmetry_nbtor_other 0.084 r_symmetry_nbd_refined 0.074 r_bond_refined_d 0.014 r_gen_planes_refined 0.011 r_gen_planes_other 0.004 r_bond_other_d 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4787 Nucleic Acid Atoms Solvent Atoms 869 Heterogen Atoms 99
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing