☰ Navigation Tabs
Crystal structure of the M295V variant of Ssl1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4M3H
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 50 mM HEPES pH 7.0, 1.4 M ammonium sulfate, 10 mM [Co(NH3)6]Cl3
Crystal Properties Matthews coefficient Solvent content 2.02 39.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.35 α = 90 b = 103.96 β = 90 c = 161.67 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2019-04-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, DESY BEAMLINE P11 1.0 PETRA III, DESY P11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.282 48.989 98.8 0.988 5.6 1.9 39762
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.282 2.294 0.484
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT NONE 4M3H 2.282 48.989 39762 1994 98.643 0.23 0.2273 0.2847 0.2625 36.986
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.176 -0.98 5.157
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_other_3_deg 40.573 r_dihedral_angle_2_deg 29.539 r_dihedral_angle_4_deg 18.536 r_dihedral_angle_3_deg 15.646 r_dihedral_angle_1_deg 8.141 r_lrange_it 5.951 r_lrange_other 5.939 r_mcangle_it 3.7 r_mcangle_other 3.7 r_scangle_it 3.244
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_other_3_deg 40.573 r_dihedral_angle_2_deg 29.539 r_dihedral_angle_4_deg 18.536 r_dihedral_angle_3_deg 15.646 r_dihedral_angle_1_deg 8.141 r_lrange_it 5.951 r_lrange_other 5.939 r_mcangle_it 3.7 r_mcangle_other 3.7 r_scangle_it 3.244 r_scangle_other 3.226 r_mcbond_it 2.242 r_mcbond_other 2.242 r_scbond_it 2.01 r_scbond_other 1.995 r_angle_refined_deg 1.411 r_angle_other_deg 1.187 r_symmetry_xyhbond_nbd_refined 0.24 r_nbd_refined 0.2 r_symmetry_nbd_other 0.194 r_xyhbond_nbd_refined 0.191 r_nbd_other 0.179 r_symmetry_xyhbond_nbd_other 0.177 r_symmetry_nbd_refined 0.167 r_nbtor_refined 0.161 r_metal_ion_refined 0.116 r_symmetry_nbtor_other 0.074 r_chiral_restr 0.049 r_xyhbond_nbd_other 0.01 r_bond_refined_d 0.006 r_gen_planes_refined 0.005 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6271 Nucleic Acid Atoms Solvent Atoms 60 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing