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Crystal structure of the M295A variant of Ssl1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4M3H
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 50 mM HEPES pH 7.0, 1.4 M ammonium sulfate, 10 mM [Co(NH3)6]Cl3
Crystal Properties Matthews coefficient Solvent content 2.05 39.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.44 α = 90 b = 104.1 β = 90 c = 163.13 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2019-05-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, DESY BEAMLINE P11 1.0 PETRA III, DESY P11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.41 30.36 99.9 0.999 13 6.7 168970
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.41 1.43 0.621
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 4M3H 1.41 30.36 168969 8343 99.828 0.201 0.1998 0.2067 0.2249 0.2309 21.936
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.758 -0.835 2.593
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.611 r_dihedral_angle_4_deg 14.774 r_dihedral_angle_3_deg 12.425 r_dihedral_angle_1_deg 7.385 r_lrange_it 4.585 r_lrange_other 4.584 r_scangle_it 3.547 r_scangle_other 3.524 r_mcangle_it 2.595 r_mcangle_other 2.595
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.611 r_dihedral_angle_4_deg 14.774 r_dihedral_angle_3_deg 12.425 r_dihedral_angle_1_deg 7.385 r_lrange_it 4.585 r_lrange_other 4.584 r_scangle_it 3.547 r_scangle_other 3.524 r_mcangle_it 2.595 r_mcangle_other 2.595 r_scbond_it 2.414 r_scbond_other 2.401 r_mcbond_it 1.899 r_mcbond_other 1.894 r_angle_refined_deg 1.657 r_angle_other_deg 1.482 r_symmetry_nbd_refined 0.201 r_nbd_refined 0.197 r_symmetry_nbd_other 0.193 r_nbd_other 0.187 r_nbtor_refined 0.168 r_symmetry_xyhbond_nbd_refined 0.142 r_xyhbond_nbd_refined 0.117 r_symmetry_nbtor_other 0.081 r_chiral_restr 0.076 r_metal_ion_refined 0.07 r_symmetry_xyhbond_nbd_other 0.059 r_bond_refined_d 0.012 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6286 Nucleic Acid Atoms Solvent Atoms 255 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling PHASER phasing