6Y7R

Structure of Chloroflexus aggregans Cagg_3753 LOV domain C85A A56P variant (CagFbFP)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2950.1 M Ammonium acetate, 0.1 M BIS-Tris pH 5.5, 17 % w/v PEG 10000
Crystal Properties
Matthew coefficientSolvent content
2.448.68

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 54.585α = 90
b = 111.289β = 90
c = 39.22γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2020-02-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONMAX IV BEAMLINE BioMAX0.976MAX IVBioMAX

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.6111.291000.1140.1190.0330.99914.513.132415
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.61.631001.6281.6940.4650.76113.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT6rhf1.639.2530768156399.870.18540.1840.214RANDOM19.52
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.18-0.38-0.81
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.17
r_dihedral_angle_4_deg14.618
r_dihedral_angle_3_deg10.944
r_dihedral_angle_1_deg6.558
r_angle_refined_deg1.284
r_angle_other_deg1.265
r_chiral_restr0.048
r_gen_planes_refined0.005
r_bond_refined_d0.004
r_gen_planes_other0.002
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.17
r_dihedral_angle_4_deg14.618
r_dihedral_angle_3_deg10.944
r_dihedral_angle_1_deg6.558
r_angle_refined_deg1.284
r_angle_other_deg1.265
r_chiral_restr0.048
r_gen_planes_refined0.005
r_bond_refined_d0.004
r_gen_planes_other0.002
r_bond_other_d
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1607
Nucleic Acid Atoms
Solvent Atoms283
Heterogen Atoms62

Software

Software
Software NamePurpose
Aimlessdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
MOLREPphasing