6WO0

human Artemis/SNM1C catalytic domain, crystal form 1


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP30050 mM MES pH 6.5, 0.1 M LiCl, 0.01 M MgCl2, 12% PEG 4000 (w/v)
Crystal Properties
Matthews coefficientSolvent content
2.5752.14

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 72.69α = 90
b = 111.01β = 90
c = 55.16γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 S 6M2019-03-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 17-ID1APS17-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.973599.60.05166.432168
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.972.020.828

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUEModel from a SAD data1.9734.54132125156099.5260.220.21770.269553.457
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.872-0.993-0.88
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.598
r_dihedral_angle_4_deg17.918
r_dihedral_angle_3_deg17.477
r_dihedral_angle_1_deg7.286
r_lrange_it6.098
r_lrange_other6.068
r_scangle_it3.521
r_scangle_other3.521
r_mcangle_other2.847
r_mcangle_it2.846
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.598
r_dihedral_angle_4_deg17.918
r_dihedral_angle_3_deg17.477
r_dihedral_angle_1_deg7.286
r_lrange_it6.098
r_lrange_other6.068
r_scangle_it3.521
r_scangle_other3.521
r_mcangle_other2.847
r_mcangle_it2.846
r_scbond_it2.17
r_scbond_other2.17
r_mcbond_it1.825
r_mcbond_other1.814
r_angle_refined_deg1.499
r_angle_other_deg1.241
r_nbd_other0.222
r_nbd_refined0.201
r_symmetry_nbd_refined0.2
r_symmetry_nbd_other0.188
r_nbtor_refined0.167
r_xyhbond_nbd_refined0.153
r_metal_ion_refined0.153
r_symmetry_xyhbond_nbd_refined0.128
r_symmetry_nbtor_other0.079
r_chiral_restr0.073
r_bond_refined_d0.007
r_gen_planes_refined0.007
r_xyhbond_nbd_other0.006
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2911
Nucleic Acid Atoms
Solvent Atoms105
Heterogen Atoms14

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing