6WLH

RNA complex of WT1 zinc finger transcription factor


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D HNCA0.5 mM [U-99% 13C; U-99% 15N] WT1 zinc finger domain, 0.5 mM RNA (29-MER), 10 mM [U-2H] TRIS, 40 mM potassium chloride, 10 mM DTT, 5 uM ZnSO4, 0.5 mM sodium azide90% H2O/10% D2O40 mM KCl mM7.11 atm310Bruker DRX 800
23D HNCACB0.5 mM [U-99% 13C; U-99% 15N] WT1 zinc finger domain, 0.5 mM RNA (29-MER), 10 mM [U-2H] TRIS, 40 mM potassium chloride, 10 mM DTT, 5 uM ZnSO4, 0.5 mM sodium azide90% H2O/10% D2O40 mM KCl mM7.11 atm310Bruker DRX 800
33D HNCO0.5 mM [U-99% 13C; U-99% 15N] WT1 zinc finger domain, 0.5 mM RNA (29-MER), 10 mM [U-2H] TRIS, 40 mM potassium chloride, 10 mM DTT, 5 uM ZnSO4, 0.5 mM sodium azide90% H2O/10% D2O40 mM KCl mM7.11 atm310Bruker DRX 800
43D HCCH-TOCSY0.5 mM [U-99% 13C; U-99% 15N] WT1 zinc finger domain, 0.5 mM RNA (29-MER), 10 mM [U-2H] TRIS, 40 mM potassium chloride, 10 mM DTT, 5 uM ZnSO4, 0.5 mM sodium azide90% H2O/10% D2O40 mM KCl mM7.11 atm310Bruker DRX 800
53D 1H-15N NOESY0.5 mM [U-15N] WT1 zinc finger domain, 10 mM [U-2H] Tris, 40 mM KCl, 10 mM DTT, 5 uM ZnSO4, 2 mM NaN3, 0.5 mM RNA (29-MER)90% H2O/10% D2O40 mM KCl mM7.11 atm310Bruker AVANCE 900
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE900
2BrukerDRX800
3BrukerAVANCE750
4BrukerAVANCE500
5BrukerDRX600
NMR Refinement
MethodDetailsSoftware
simulated annealingAmber
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number800
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2data analysisNMRViewJohnson, One Moon Scientific
3chemical shift assignmentNMRViewJohnson, One Moon Scientific
4peak pickingNMRViewJohnson, One Moon Scientific
5structure calculationCYANAGuntert, Mumenthaler and Wuthrich
6refinementAmberCase, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, and Kollman