61 nt human Hepatitis B virus epsilon pre-genomic RNA
SOLUTION NMR - SOLUTION SCATTERING
NMR Experiment |
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
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1 | 2D 1H-15N HSQC | 0.8 mM [U-13C; U-15N] RNA (61-MER) | 90% H2O/10% D2O | 10 mM | 6.4 | 1 atm | 298 | Bruker Ascend 800 |
2 | 2D 1H-13C HSQC aliphatic | 0.8 mM [U-13C; U-15N] RNA (61-MER) | 100% D2O | 10 mM | 6.4 | 1 atm | 298 | Bruker Ascend 800 |
3 | 2D 1H-13C HSQC aromatic | 0.8 mM [U-13C; U-15N] RNA (61-MER) | 100% D2O | 10 mM | 6.4 | 1 atm | 298 | Bruker Ascend 800 |
4 | 3D 1H-15N NOESY | 0.8 mM [U-13C; U-15N] RNA (61-MER) | 90% H2O/10% D2O | 10 mM | 6.4 | 1 atm | 298 | Bruker Ascend 800 |
5 | 3D 1H-13C NOESY aliphatic | 0.8 mM [U-13C; U-15N] RNA (61-MER) | 100% D2O | 10 mM | 6.4 | 1 atm | 298 | Bruker Ascend 800 |
6 | 3D 1H-13C NOESY aromatic | 0.8 mM [U-13C; U-15N] RNA (61-MER) | 100% D2O | 10 mM | 6.4 | 1 atm | 298 | Bruker Ascend 800 |
7 | 2D 1H-1H NOESY | 0.8 mM [U-13C; U-15N] RNA (61-MER) | 90% H2O/10% D2O | 10 mM | 6.4 | 1 atm | 298 | Bruker Ultrashield Plus 600 |
8 | 2D 1H-1H NOESY | 0.8 mM [U-13C; U-15N] RNA (61-MER) | 100% D2O | 10 mM | 6.4 | 1 atm | 298 | Bruker Ultrashield Plus 600 |
9 | 3D HCN | 0.8 mM [U-13C; U-15N] RNA (61-MER) | 100% D2O | 10 mM | 6.4 | 1 atm | 298 | Bruker Ascend 800 |
10 | 2D HNCCNCH | 0.8 mM [U-13C; U-15N] RNA (61-MER) | 90% H2O/10% D2O | 10 mM | 6.4 | 1 atm | 298 | Bruker Ascend 800 |
11 | Filter/Edit NOESY | 0.7 mM 13C-selective RNA (61-MER) | 100% D2O | 10 mM | 6.4 | 1 atm | 298 | Bruker Ascend 800 |
NMR Spectrometer Information |
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Spectrometer | Manufacturer | Model | Field Strength |
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1 | Bruker | Ascend | 800 |
2 | Bruker | Ultrashield Plus | 600 |
NMR Refinement |
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Method | Details | Software |
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simulated annealing | | X-PLOR NIH |
NMR Ensemble Information |
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Conformer Selection Criteria | structures with the lowest energy |
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Conformers Calculated Total Number | 200 |
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Conformers Submitted Total Number | 10 |
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Representative Model | 1 (lowest energy) |
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Computation: NMR Software |
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# | Classification | Version | Software Name | Author |
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1 | refinement | X-PLOR NIH | | Schwieters, Kuszewski, Tjandra and Clore |
2 | structure calculation | X-PLOR NIH | | Schwieters, Kuszewski, Tjandra and Clore |
3 | chemical shift assignment | NMRView | | Johnson, One Moon Scientific |
4 | peak picking | NMRView | | Johnson, One Moon Scientific |