6VA3

Solution Structure of the Tau pre-mRNA Exon 10 Splicing Regulatory Element Bound to MQC


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
1D2O 2D 1H-1H NOESY0.4 mM WT Tau RNA, 0.6 mM MQC, 10 mM KH2PO4/K2HPO4, 0.05 mM EDTA100% D2O10 mM6.01 atm308Bruker AVANCE III 700
3D2O 2D DQF-COSY0.4 mM WT Tau RNA, 0.6 mM MQC, 10 mM KH2PO4/K2HPO4, 0.05 mM EDTA100% D2O10 mM6.01 atm308Bruker AVANCE III 700
2H2O 2D 1H-1H NOESY0.4 mM WT Tau RNA, 0.6 mM MQC, 10 mM KH2PO4/K2HPO4, 0.05 mM EDTA95% H2O/5% D2O10 mM6.01 atm278Bruker AVANCE III 850
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III700
2BrukerAVANCE III850
NMR Refinement
MethodDetailsSoftware
simulated annealingAmber
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations
Conformers Calculated Total Number60
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4processingTopSpinBruker Biospin
2chemical shift assignmentSparkyGoddard
3refinementAmber14Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, and Kollman
5structure calculationAmber14Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, and Kollman