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Rapid optimisation of fragments and hits to lead compounds from screening of crude reaction mixtures
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 277 10% PEG3350,
0.1 M sodium cacodylate pH 6.5,
0.2 M MgCl2
Crystal Properties Matthews coefficient Solvent content 2.84 56.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.72 α = 90 b = 89.53 β = 90 c = 100.025 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2018-10-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.91587 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.165 54.925 91.1 0.057 0.999 14 6.1 78794
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.165 1.247 60.9 0.654 0.686 1.6 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MIR FREE R-VALUE 1.165 54.925 74921 3900 77.335 0.169 0.1687 0.1687 0.1836 0.1836 16.209
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.002 0.012 -0.009
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.905 r_dihedral_angle_4_deg 20.293 r_dihedral_angle_3_deg 11.44 r_dihedral_angle_1_deg 6.182 r_lrange_it 6.069 r_lrange_other 5.69 r_scangle_it 3.94 r_scangle_other 3.938 r_scbond_other 2.774 r_scbond_it 2.773
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.905 r_dihedral_angle_4_deg 20.293 r_dihedral_angle_3_deg 11.44 r_dihedral_angle_1_deg 6.182 r_lrange_it 6.069 r_lrange_other 5.69 r_scangle_it 3.94 r_scangle_other 3.938 r_scbond_other 2.774 r_scbond_it 2.773 r_mcangle_other 2.599 r_mcangle_it 2.593 r_angle_other_deg 2.387 r_angle_refined_deg 2.159 r_mcbond_it 1.702 r_mcbond_other 1.688 r_symmetry_xyhbond_nbd_other 0.464 r_symmetry_xyhbond_nbd_refined 0.294 r_xyhbond_nbd_refined 0.251 r_nbd_refined 0.248 r_symmetry_nbd_other 0.216 r_nbd_other 0.204 r_nbtor_refined 0.178 r_chiral_restr 0.111 r_symmetry_nbtor_other 0.078 r_symmetry_nbd_refined 0.07 r_bond_other_d 0.035 r_bond_refined_d 0.018 r_gen_planes_other 0.016 r_gen_planes_refined 0.012
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1633 Nucleic Acid Atoms Solvent Atoms 395 Heterogen Atoms 22
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling REFMAC phasing