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Rapid optimisation of fragments and hits to lead compounds from screening of crude reaction mixtures
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.8 277 0.1 M Sodium acetate pH 5.8
0.125 M Magnesium chloride
Crystal Properties Matthews coefficient Solvent content 3.19 61.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 108.516 α = 90 b = 108.516 β = 90 c = 83.676 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2018-10-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.91587 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.768 62.494 92.9 0.067 0.999 17.2 10.4 30662
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.768 2.021 63.8 1.065 0.791 2 9.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MIR FREE R-VALUE 1.768 62.494 29137 1530 55.269 0.173 0.1706 0.1707 0.2105 0.2102 40.967
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.005 -0.01 0.032
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.058 r_dihedral_angle_4_deg 20.701 r_dihedral_angle_3_deg 15.987 r_lrange_other 8.83 r_lrange_it 8.824 r_scangle_it 6.619 r_scangle_other 6.617 r_dihedral_angle_1_deg 6.563 r_mcangle_other 5.166 r_mcangle_it 5.165
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.058 r_dihedral_angle_4_deg 20.701 r_dihedral_angle_3_deg 15.987 r_lrange_other 8.83 r_lrange_it 8.824 r_scangle_it 6.619 r_scangle_other 6.617 r_dihedral_angle_1_deg 6.563 r_mcangle_other 5.166 r_mcangle_it 5.165 r_scbond_it 4.365 r_scbond_other 4.364 r_mcbond_it 3.54 r_mcbond_other 3.526 r_angle_other_deg 2.328 r_angle_refined_deg 1.525 r_symmetry_nbd_refined 0.253 r_symmetry_nbd_other 0.215 r_nbd_refined 0.214 r_nbd_other 0.205 r_symmetry_xyhbond_nbd_refined 0.198 r_xyhbond_nbd_refined 0.173 r_nbtor_refined 0.172 r_chiral_restr 0.079 r_symmetry_nbtor_other 0.07 r_bond_other_d 0.034 r_gen_planes_other 0.011 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_symmetry_xyhbond_nbd_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2730 Nucleic Acid Atoms Solvent Atoms 204 Heterogen Atoms 51
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling REFMAC phasing