6TKP

Tankyrase 2 in complex with an inhibitor (OM-1900)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP295.157.5-25% PEG 6000, Bicine, pH = 9.0
Crystal Properties
Matthews coefficientSolvent content
2.244.08

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 42.01α = 90
b = 77.08β = 90
c = 148.36γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2017-11-27MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-11.03285ESRFID23-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.45099.90.99811.036.50519583
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.42.460.801

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE5NOB2.441.6581958398099.9080.2070.20520.245740.297
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.3743.185-3.56
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.13
r_dihedral_angle_3_deg14.766
r_dihedral_angle_4_deg13.589
r_dihedral_angle_1_deg6.751
r_lrange_it5.308
r_lrange_other5.306
r_mcangle_it3.269
r_mcangle_other3.269
r_scangle_it3.04
r_scangle_other3.039
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.13
r_dihedral_angle_3_deg14.766
r_dihedral_angle_4_deg13.589
r_dihedral_angle_1_deg6.751
r_lrange_it5.308
r_lrange_other5.306
r_mcangle_it3.269
r_mcangle_other3.269
r_scangle_it3.04
r_scangle_other3.039
r_mcbond_it1.85
r_mcbond_other1.847
r_scbond_it1.738
r_scbond_other1.738
r_chiral_restr_other1.409
r_angle_refined_deg1.275
r_angle_other_deg1.211
r_nbd_other0.172
r_symmetry_nbd_other0.17
r_nbd_refined0.167
r_nbtor_refined0.162
r_symmetry_xyhbond_nbd_refined0.153
r_symmetry_nbd_refined0.147
r_xyhbond_nbd_refined0.119
r_ncsr_local_group_10.085
r_symmetry_nbtor_other0.069
r_chiral_restr0.044
r_bond_refined_d0.004
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3280
Nucleic Acid Atoms
Solvent Atoms120
Heterogen Atoms78

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing