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HKATII IN COMPLEX WITH LIGAND (2R)-N-benzyl-1-[6-methyl-5-(oxan-4-yl)-7-oxo-6H,7H-[1,3]thiazolo[5,4-d]pyrimidin-2-yl]pyrrolidine-2-carboxamide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5TF5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 PEG 3350, ammonium iodide
Crystal Properties Matthews coefficient Solvent content 2.54 51.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.057 α = 90 b = 96.936 β = 90 c = 116.26 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2018-07-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.99995 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.02 74.45 95.3 0.085 0.107 0.995 10.63 2.4 62074 30.166
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.02 2.27 97.1 0.442 0.023 0.999 0.4686 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5TF5 2.02 74.45 60258 1816 95.3 0.1797 0.1784 0.1848 0.2223 0.2249 RANDOM 32.009
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.05 -0.23 1.27
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 74.875 r_dihedral_angle_2_deg 40.977 r_sphericity_bonded 31.93 r_dihedral_angle_4_deg 19.259 r_dihedral_angle_3_deg 13.223 r_dihedral_angle_1_deg 6.91 r_angle_refined_deg 1.674 r_angle_other_deg 1.315 r_chiral_restr 0.097 r_bond_refined_d 0.012
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 74.875 r_dihedral_angle_2_deg 40.977 r_sphericity_bonded 31.93 r_dihedral_angle_4_deg 19.259 r_dihedral_angle_3_deg 13.223 r_dihedral_angle_1_deg 6.91 r_angle_refined_deg 1.674 r_angle_other_deg 1.315 r_chiral_restr 0.097 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d 0.004 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6512 Nucleic Acid Atoms Solvent Atoms 571 Heterogen Atoms 135
Software Software Software Name Purpose XDS data reduction XSCALE data scaling REFMAC phasing REFMAC refinement PDB_EXTRACT data extraction