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Structure of the U1A variant A1-98 Y31H/Q36R/K98W
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 2.2 M ammonium sulfate, 0.2 M tri-potassium citrate
Crystal Properties Matthews coefficient Solvent content 2.42 49.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.258 α = 90 b = 76.258 β = 90 c = 151.481 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-12-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, DESY BEAMLINE P11 1.03320 PETRA III, DESY P11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.86 68.11 100 0.142 0.145 0.999 14.8 24.1 38415
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.86 1.89 99.6 0.923 0.956 0.54 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.86 68.11 38337 1920 99.945 0.223 0.2214 0.2217 0.256 0.2566 28.351
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.551 -0.551 1.103
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.831 r_dihedral_angle_4_deg 17.075 r_dihedral_angle_3_deg 14.535 r_dihedral_angle_1_deg 6.508 r_lrange_other 6.48 r_lrange_it 6.478 r_scangle_other 5.038 r_scangle_it 5.034 r_mcangle_it 3.513 r_mcangle_other 3.513
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.831 r_dihedral_angle_4_deg 17.075 r_dihedral_angle_3_deg 14.535 r_dihedral_angle_1_deg 6.508 r_lrange_other 6.48 r_lrange_it 6.478 r_scangle_other 5.038 r_scangle_it 5.034 r_mcangle_it 3.513 r_mcangle_other 3.513 r_scbond_it 3.183 r_scbond_other 3.181 r_mcbond_it 2.408 r_mcbond_other 2.405 r_angle_refined_deg 1.561 r_angle_other_deg 1.365 r_nbd_other 0.234 r_nbd_refined 0.201 r_symmetry_nbd_other 0.183 r_nbtor_refined 0.165 r_symmetry_xyhbond_nbd_refined 0.16 r_symmetry_nbd_refined 0.155 r_symmetry_nbtor_other 0.126 r_xyhbond_nbd_refined 0.1 r_chiral_restr 0.081 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2902 Nucleic Acid Atoms Solvent Atoms 81 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling PHASER phasing