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Precursor structure of the self-processing module of iron-regulated FrpC of N. Meningitidis with calcium ions
SOLUTION NMR
NMR Experiment
Experiment
Type
Sample Contents
Solvent
Ionic Strength
pH
Pressure
Temperature (K)
Spectrometer
1
2D 1H-15N HSQC
5 mM TRIS, 50 mM sodium chloride, 0.1 % sodium azide, 10 mM Calcium chloride, 0.35 mM [U-99% 13C; U-99% 15N] P415A mutant of Self-processing module of FrpC
90% H2O/10% D2O
65 mM
7.4
1 atm
303.2
Bruker AVANCE III 600
2
3D HNCO
5 mM TRIS, 50 mM sodium chloride, 0.1 % sodium azide, 10 mM Calcium chloride, 0.35 mM [U-99% 13C; U-99% 15N] P415A mutant of Self-processing module of FrpC
90% H2O/10% D2O
65 mM
7.4
1 atm
303.2
Bruker AVANCE III 600
3
3D HNCACB
5 mM TRIS, 50 mM sodium chloride, 0.1 % sodium azide, 10 mM Calcium chloride, 0.35 mM [U-99% 13C; U-99% 15N] P415A mutant of Self-processing module of FrpC
90% H2O/10% D2O
65 mM
7.4
1 atm
303.2
Bruker AVANCE III 600
4
3D CBCA(CO)NH
5 mM TRIS, 50 mM sodium chloride, 0.1 % sodium azide, 10 mM Calcium chloride, 0.35 mM [U-99% 13C; U-99% 15N] P415A mutant of Self-processing module of FrpC
90% H2O/10% D2O
65 mM
7.4
1 atm
303.2
Bruker AVANCE III 600
5
3D HCCH-TOCSY
5 mM TRIS, 50 mM sodium chloride, 0.1 % sodium azide, 10 mM Calcium chloride, 0.35 mM [U-99% 13C; U-99% 15N] P415A mutant of Self-processing module of FrpC
90% H2O/10% D2O
65 mM
7.4
1 atm
303.2
Bruker AVANCE III 600
6
3D 1H-13C NOESY aliphatic
5 mM TRIS, 50 mM sodium chloride, 0.1 % sodium azide, 10 mM Calcium chloride, 0.35 mM [U-99% 13C; U-99% 15N] P415A mutant of Self-processing module of FrpC
90% H2O/10% D2O
65 mM
7.4
1 atm
303.2
Bruker AVANCE III 950
7
3D 1H-15N NOESY
5 mM TRIS, 50 mM sodium chloride, 0.1 % sodium azide, 10 mM Calcium chloride, 0.35 mM [U-99% 13C; U-99% 15N] P415A mutant of Self-processing module of FrpC
90% H2O/10% D2O
65 mM
7.4
1 atm
303.2
Bruker AVANCE III 950
8
1D WATERGATE W5
50 mM TRIS, 50 mM sodium chloride, 0.1 % sodium azide, 0.707 mM P415A mutant of Self-processing module of FrpC
90% H2O/10% D2O
100 mM
7.4
1 atm
303.2
Bruker AVANCE III 850
NMR Spectrometer Information
Spectrometer
Manufacturer
Model
Field Strength
1
Bruker
AVANCE III
600
3
Bruker
AVANCE III
850
2
Bruker
AVANCE III
950
NMR Refinement
Method
Details
Software
simulated annealing
GROMACS
NMR Ensemble Information
Conformer Selection Criteria
structures with the least restraint violations
Conformers Calculated Total Number
20
Conformers Submitted Total Number
14
Representative Model
1 (medoid)
Computation: NMR Software
#
Classification
Version
Software Name
Author
1
chemical shift assignment
Sparky
3.115
Goddard
2
processing
TopSpin
3.2
Bruker Biospin
3
processing
NMRPipe
Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4
structure calculation
CYANA
3.97
Guntert, Mumenthaler and Wuthrich
5
refinement
GROMACS
5.1.1
Erik Lindahl, David van der Spoel, Berk Hess, Mark Abraham