6SGG

Crystal structure of monooxygenase RutA complexed with dioxygen under 1.5 MPa / 15 bars of oxygen pressure.


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP295100 mM Bis-Tris pH 6.5, 1900 mM ammonium sulphate, 2-5% MPD (v/v) and 1 mM FMN
Crystal Properties
Matthews coefficientSolvent content
2.6854.08

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 87.727α = 90
b = 87.727β = 90
c = 96.396γ = 120
Symmetry
Space GroupP 31 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2018-06-27MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1.0SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.848.21000.1210.89.840260
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.90.861

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT5WAN1.843.90240174207799.8560.1550.15390.171125.803
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.0250.0120.025-0.08
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.646
r_dihedral_angle_4_deg18.73
r_dihedral_angle_3_deg12.849
r_lrange_it7.124
r_lrange_other7.101
r_dihedral_angle_1_deg7.006
r_scangle_it5.972
r_scangle_other5.971
r_scbond_it4.003
r_scbond_other3.996
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.646
r_dihedral_angle_4_deg18.73
r_dihedral_angle_3_deg12.849
r_lrange_it7.124
r_lrange_other7.101
r_dihedral_angle_1_deg7.006
r_scangle_it5.972
r_scangle_other5.971
r_scbond_it4.003
r_scbond_other3.996
r_mcangle_it3.013
r_mcangle_other3.013
r_mcbond_it2.327
r_mcbond_other2.313
r_angle_refined_deg1.841
r_angle_other_deg1.558
r_symmetry_nbd_refined0.245
r_symmetry_xyhbond_nbd_refined0.212
r_nbd_refined0.208
r_symmetry_nbd_other0.182
r_nbtor_refined0.179
r_nbd_other0.16
r_xyhbond_nbd_refined0.141
r_chiral_restr0.097
r_symmetry_nbtor_other0.086
r_bond_refined_d0.013
r_gen_planes_refined0.011
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2610
Nucleic Acid Atoms
Solvent Atoms161
Heterogen Atoms44

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
SCALAdata scaling
PHASERphasing