6SFG

CRYSTAL STRUCTURE OF DHQ1 FROM SALMONELLA TYPHI COVALENTLY MODIFIED BY COMPOUND 9


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP729334% PEG 2000 MME, 100mM HEPES pH7
Crystal Properties
Matthews coefficientSolvent content
2.0439.71

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 46.582α = 90
b = 114.158β = 90
c = 42.478γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2017-07-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALBA BEAMLINE XALOC0.97918ALBAXALOC

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.2357.0899.90.1310.1430.0580.9928.96.266200
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.231.31001.0971.2010.4840.6386.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4UIO1.2357.0862328328099.080.15260.15090.1847RANDOM14.589
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.380.84-1.22
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.065
r_sphericity_free25.629
r_dihedral_angle_4_deg17.956
r_dihedral_angle_3_deg11.974
r_sphericity_bonded7.802
r_dihedral_angle_1_deg5.562
r_angle_refined_deg1.558
r_rigid_bond_restr1.344
r_angle_other_deg1.211
r_chiral_restr0.096
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.065
r_sphericity_free25.629
r_dihedral_angle_4_deg17.956
r_dihedral_angle_3_deg11.974
r_sphericity_bonded7.802
r_dihedral_angle_1_deg5.562
r_angle_refined_deg1.558
r_rigid_bond_restr1.344
r_angle_other_deg1.211
r_chiral_restr0.096
r_bond_refined_d0.011
r_gen_planes_refined0.008
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1936
Nucleic Acid Atoms
Solvent Atoms326
Heterogen Atoms25

Software

Software
Software NamePurpose
Aimlessdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
PHASERphasing