☰ Navigation Tabs
Crystal structure of RagA-Q66L/RagC-T90N GTPase heterodimer complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 100mM MOPSO, Bis-Tris pH 6.5, 40mM polyamines ( mixture of spermine tetrahydrochloride, spermidine trihydrochloride, 1,4. diaminobutane dihydrochloride, 0.1 M D/L-ornithine monohydrochloride), 10% (w/v) PEG 8000. 20% (v/v) 1,5 - Pentanediol and 24 % (v/v) glycerol.
Crystal Properties Matthews coefficient Solvent content 2.36 47.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.103 α = 90 b = 81.856 β = 90 c = 244.076 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 4M 2017-10-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE MASSIF-3 0.9677 ESRF MASSIF-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.63 46.62 98 0.065 0.07 0.999 17.91 6.787 43123 83.533
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.63 2.79 97.6 1.26 1.362 0.587 1.24 6.886
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.63 46.62 41018 2105 98.01 0.1992 0.1954 0.2014 0.2746 0.2735 RANDOM 89.865
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.83 -2.32 3.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.516 r_dihedral_angle_3_deg 20.657 r_dihedral_angle_4_deg 20.165 r_dihedral_angle_1_deg 8.643 r_angle_refined_deg 1.85 r_angle_other_deg 1.283 r_chiral_restr 0.08 r_bond_refined_d 0.013 r_gen_planes_refined 0.01 r_gen_planes_other 0.008
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.516 r_dihedral_angle_3_deg 20.657 r_dihedral_angle_4_deg 20.165 r_dihedral_angle_1_deg 8.643 r_angle_refined_deg 1.85 r_angle_other_deg 1.283 r_chiral_restr 0.08 r_bond_refined_d 0.013 r_gen_planes_refined 0.01 r_gen_planes_other 0.008 r_bond_other_d 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9314 Nucleic Acid Atoms Solvent Atoms 73 Heterogen Atoms 143
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing PDB_EXTRACT data extraction