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LXRbeta ligand binding domain in complex with small molecule inhibitors
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 100 mM PIPES pH 7 and 17% PEG4000
Crystal Properties Matthews coefficient Solvent content 2.61 52.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.728 α = 90 b = 58.728 β = 90 c = 148.026 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2005-03-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.93 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 50.86 96.2 8.3 4.9 187172
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.6 50.86 38225 1864 95.673 0.182 0.1803 0.2142 0.2341 29.664
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.259 r_dihedral_angle_3_deg 14.652 r_dihedral_angle_4_deg 14.541 r_lrange_it 9.82 r_lrange_other 9.773 r_scangle_other 7.69 r_scangle_it 7.587 r_dihedral_angle_1_deg 5.708 r_scbond_other 5.085 r_scbond_it 5.016
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.259 r_dihedral_angle_3_deg 14.652 r_dihedral_angle_4_deg 14.541 r_lrange_it 9.82 r_lrange_other 9.773 r_scangle_other 7.69 r_scangle_it 7.587 r_dihedral_angle_1_deg 5.708 r_scbond_other 5.085 r_scbond_it 5.016 r_mcangle_other 4.715 r_mcangle_it 4.713 r_mcbond_it 3.257 r_mcbond_other 3.252 r_angle_refined_deg 2.351 r_angle_other_deg 1.14 r_symmetry_nbd_refined 0.337 r_nbd_refined 0.263 r_nbtor_refined 0.198 r_nbd_other 0.195 r_xyhbond_nbd_refined 0.165 r_symmetry_nbd_other 0.156 r_chiral_restr 0.139 r_symmetry_nbtor_other 0.079 r_symmetry_xyhbond_nbd_refined 0.059 r_bond_refined_d 0.025 r_symmetry_xyhbond_nbd_other 0.02 r_gen_planes_refined 0.012 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1820 Nucleic Acid Atoms Solvent Atoms 204 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing