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LXRbeta ligand binding domain in comlpex with small molecule inhibitors
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.5 293 100 mM Bis-Tris pH 6.5, 2 M sodium formate and 100 mM NaCl
Crystal Properties Matthews coefficient Solvent content 2.82 56.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 135.275 α = 90 b = 135.275 β = 90 c = 69.734 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2006-08-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 1 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 95.8 99.8 5.5 9.2 22128
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2 62.017 22054 1132 99.702 0.207 0.2048 0.2116 0.2381 0.2391 38.909
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.104 -0.104 0.209
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.748 r_dihedral_angle_3_deg 17.798 r_dihedral_angle_4_deg 13.758 r_lrange_other 5.569 r_lrange_it 5.478 r_dihedral_angle_1_deg 5.036 r_scangle_other 3.436 r_scangle_it 3.358 r_mcangle_it 2.869 r_mcangle_other 2.867
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.748 r_dihedral_angle_3_deg 17.798 r_dihedral_angle_4_deg 13.758 r_lrange_other 5.569 r_lrange_it 5.478 r_dihedral_angle_1_deg 5.036 r_scangle_other 3.436 r_scangle_it 3.358 r_mcangle_it 2.869 r_mcangle_other 2.867 r_scbond_other 2.007 r_scbond_it 1.967 r_mcbond_it 1.757 r_mcbond_other 1.757 r_angle_refined_deg 1.321 r_angle_other_deg 0.968 r_nbd_refined 0.285 r_symmetry_nbd_refined 0.245 r_nbd_other 0.196 r_nbtor_refined 0.187 r_symmetry_nbd_other 0.155 r_xyhbond_nbd_refined 0.116 r_symmetry_xyhbond_nbd_refined 0.108 r_symmetry_nbtor_other 0.076 r_chiral_restr 0.074 r_bond_refined_d 0.008 r_bond_other_d 0.006 r_gen_planes_refined 0.005 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1933 Nucleic Acid Atoms Solvent Atoms 114 Heterogen Atoms 78
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling AMoRE phasing