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Crystal structure of the Cbp3 homolog from Brucella abortus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 294 20% v/v polyethylene glycol 8000, 0.1 M TRIS pH 8.0, 0.2 M magnesium chloride hexahydrate
Crystal Properties Matthews coefficient Solvent content 2.96 58.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.418 α = 90 b = 55.909 β = 90 c = 97.585 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-12-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.9282 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.42 44.4 99.9 0.052 0.054 0.014 1 18 13.5 46643 21.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.42 1.44 98 1.906 1.992 0.575 0.608 1.2 11.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING THROUGHOUT 1.42 44.42 44132 2223 99.25 0.17004 0.16845 0.1695 0.20127 0.2018 RANDOM 27.538
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.18 0.85 -0.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.746 r_sphericity_free 23.377 r_dihedral_angle_4_deg 17.175 r_dihedral_angle_3_deg 11.13 r_sphericity_bonded 9.052 r_dihedral_angle_1_deg 4.444 r_long_range_B_refined 3.378 r_long_range_B_other 3.378 r_scangle_other 2.243 r_mcangle_other 1.979
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.746 r_sphericity_free 23.377 r_dihedral_angle_4_deg 17.175 r_dihedral_angle_3_deg 11.13 r_sphericity_bonded 9.052 r_dihedral_angle_1_deg 4.444 r_long_range_B_refined 3.378 r_long_range_B_other 3.378 r_scangle_other 2.243 r_mcangle_other 1.979 r_mcangle_it 1.973 r_scbond_it 1.859 r_scbond_other 1.858 r_mcbond_it 1.561 r_mcbond_other 1.504 r_angle_refined_deg 1.18 r_rigid_bond_restr 1.131 r_angle_other_deg 0.925 r_chiral_restr 0.065 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1437 Nucleic Acid Atoms Solvent Atoms 224 Heterogen Atoms 22
Software Software Software Name Purpose REFMAC refinement DIALS data reduction Aimless data scaling Arcimboldo phasing