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Crystal structure of di-phosphorylated human CLK1 in complex with 4-(1-methyl-1H-indol-3-yl)pyrimidin-2-amine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 24% PEG 3350, 200mM MgCl2, 100mM BisTris (pH 6.5)
Crystal Properties Matthews coefficient Solvent content 2.45 49.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.543 α = 90 b = 68.543 β = 90 c = 285.08 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2017-11-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 1.0 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 59.36 99.8 19.5 6.2 41291
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.78 100 0.644 6.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.75 59.36 39074 2097 99.63 0.21815 0.21575 0.2247 0.26331 0.2703 RANDOM 41.867
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.76 0.38 0.76 -2.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.821 r_dihedral_angle_4_deg 15.931 r_dihedral_angle_3_deg 14.725 r_long_range_B_refined 7.572 r_long_range_B_other 7.57 r_dihedral_angle_1_deg 6.694 r_scangle_other 6.241 r_mcangle_it 4.207 r_mcangle_other 4.207 r_scbond_it 4.164
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.821 r_dihedral_angle_4_deg 15.931 r_dihedral_angle_3_deg 14.725 r_long_range_B_refined 7.572 r_long_range_B_other 7.57 r_dihedral_angle_1_deg 6.694 r_scangle_other 6.241 r_mcangle_it 4.207 r_mcangle_other 4.207 r_scbond_it 4.164 r_scbond_other 4.163 r_mcbond_it 3.312 r_mcbond_other 3.312 r_angle_refined_deg 1.797 r_angle_other_deg 1.053 r_chiral_restr 0.118 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2719 Nucleic Acid Atoms Solvent Atoms 157 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALEPACK data scaling MOLREP phasing