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murine Neuroglobin under 2 kBar of argon
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4O4T
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.5 291 1.6M AMMONIUM SULPHATE, 0.1M MES, PH 6.5, 10 % DIOXANE
Crystal Properties Matthews coefficient Solvent content 2.58 52.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.951 α = 90 b = 87.951 β = 90 c = 112.923 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2018-07-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 1.771 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 45.35 98.8 0.076 0.019 21.7 16.3 15605 31.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 92.2 0.561 0.206 2.9 4.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 4o4T 1.95 44.01 11859 633 99.98 0.19674 0.19353 0.2585 0.2872 RANDOM 38.248
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.288 r_dihedral_angle_4_deg 20.342 r_dihedral_angle_3_deg 18.374 r_long_range_B_other 9.074 r_long_range_B_refined 9.036 r_scangle_other 6.399 r_mcangle_it 5.885 r_mcangle_other 5.885 r_dihedral_angle_1_deg 5.641 r_scbond_it 4.255
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.288 r_dihedral_angle_4_deg 20.342 r_dihedral_angle_3_deg 18.374 r_long_range_B_other 9.074 r_long_range_B_refined 9.036 r_scangle_other 6.399 r_mcangle_it 5.885 r_mcangle_other 5.885 r_dihedral_angle_1_deg 5.641 r_scbond_it 4.255 r_scbond_other 4.255 r_mcbond_other 4.208 r_mcbond_it 4.201 r_angle_refined_deg 1.99 r_angle_other_deg 1.798 r_chiral_restr 0.088 r_bond_refined_d 0.011 r_gen_planes_refined 0.011 r_gen_planes_other 0.004 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1172 Nucleic Acid Atoms Solvent Atoms 103 Heterogen Atoms 62
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling FFT phasing