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Human SHMT2 in complex with lometrexol
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 291 0.1 M Bis-tris pH 6.5, 28 % PEGMME2000
Crystal Properties Matthews coefficient Solvent content 3.38 63.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 158.807 α = 90 b = 158.807 β = 90 c = 208.257 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2018-07-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 1.07 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.32 208.3 99.8 14.7 39.3 2640873
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.32 208.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.32 208.26 63841 3369 99.73 0.20112 0.1993 0.2061 0.2358 0.2386 RANDOM 37.101
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.51 0.26 0.51 -1.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.166 r_dihedral_angle_4_deg 18.166 r_dihedral_angle_3_deg 15.646 r_dihedral_angle_1_deg 6.457 r_long_range_B_refined 5.303 r_long_range_B_other 5.303 r_scangle_other 3.079 r_mcangle_it 2.817 r_mcangle_other 2.817 r_scbond_it 1.781
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.166 r_dihedral_angle_4_deg 18.166 r_dihedral_angle_3_deg 15.646 r_dihedral_angle_1_deg 6.457 r_long_range_B_refined 5.303 r_long_range_B_other 5.303 r_scangle_other 3.079 r_mcangle_it 2.817 r_mcangle_other 2.817 r_scbond_it 1.781 r_scbond_other 1.78 r_mcbond_it 1.676 r_mcbond_other 1.675 r_angle_refined_deg 1.43 r_angle_other_deg 0.965 r_chiral_restr 0.08 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7087 Nucleic Acid Atoms Solvent Atoms 368 Heterogen Atoms 130
Software Software Software Name Purpose REFMAC refinement DIALS data reduction Aimless data scaling PHASER phasing