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TT_C0855 competence pilin from Thermus thermophilus HB27
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 0.2 M ammonium nitrate, 0.1 M Bis-Tris propane pH 8.5, and 18% v/v PEG Smear High
Crystal Properties Matthews coefficient Solvent content 2.79 55.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.588 α = 90 b = 137.815 β = 98.18 c = 59.739 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2018-01-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.97624 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.39 69 86.5 0.059 0.07 0.038 8.6 3.4 154421
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.39 1.44 59.3 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 1.44 68.91 128589 1703 89.39 0.1518 0.1513 0.1539 0.1893 0.1922 RANDOM 25.144
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.27 -0.4 -1.17 1.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.157 r_sphericity_free 18.564 r_dihedral_angle_4_deg 14.669 r_dihedral_angle_3_deg 13.382 r_sphericity_bonded 11.423 r_dihedral_angle_1_deg 5.559 r_rigid_bond_restr 4.723 r_angle_refined_deg 1.435 r_angle_other_deg 1.052 r_chiral_restr 0.079
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.157 r_sphericity_free 18.564 r_dihedral_angle_4_deg 14.669 r_dihedral_angle_3_deg 13.382 r_sphericity_bonded 11.423 r_dihedral_angle_1_deg 5.559 r_rigid_bond_restr 4.723 r_angle_refined_deg 1.435 r_angle_other_deg 1.052 r_chiral_restr 0.079 r_bond_refined_d 0.011 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5174 Nucleic Acid Atoms Solvent Atoms 1006 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction xia2 data reduction xia2 data scaling PHENIX phasing