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Cathepsin-K in complex with MIV-701
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.1 291 25mM ADA pH6.1, 300mM NaCl & 20% PEG 5k.mme
Crystal Properties Matthews coefficient Solvent content 2.03 39.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.537 α = 74.34 b = 51.855 β = 76.39 c = 57.26 γ = 84.7
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2007-09-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 1.0723 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 53.79 84.8 0.114 0.126 0.054 0.99 11.4 4.9 50544
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.53 33.2 0.375 0.458 0.256 0.701 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.5 53.79 48007 2520 84.93 0.1032 0.1011 0.1291 0.142 0.1285 RANDOM 11.956
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.34 0.22 -0.16 0.01 0.12 0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.47 r_sphericity_free 22.93 r_dihedral_angle_4_deg 14.654 r_dihedral_angle_3_deg 11.653 r_sphericity_bonded 5.173 r_dihedral_angle_1_deg 5.118 r_angle_refined_deg 1.63 r_rigid_bond_restr 0.967 r_angle_other_deg 0.964 r_chiral_restr 0.091
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.47 r_sphericity_free 22.93 r_dihedral_angle_4_deg 14.654 r_dihedral_angle_3_deg 11.653 r_sphericity_bonded 5.173 r_dihedral_angle_1_deg 5.118 r_angle_refined_deg 1.63 r_rigid_bond_restr 0.967 r_angle_other_deg 0.964 r_chiral_restr 0.091 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3320 Nucleic Acid Atoms Solvent Atoms 737 Heterogen Atoms 102
Software Software Software Name Purpose MOSFLM data reduction Aimless data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction