6PRN

E1M, K50A, R52A MUTANT OF RH. BLASTICA PORIN


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.8pH 7.8
Crystal Properties
Matthews coefficientSolvent content
4.2766

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 104.36α = 90
b = 104.36β = 90
c = 124.25γ = 120
Symmetry
Space GroupH 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray293IMAGE PLATEMARRESEARCH1997-08-26M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RUH3R

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.0419.799.80.0450.04519.33.532038
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.042.1599.60.1810.1815.12.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONDIFFERENCE FOURIERTHROUGHOUTPDB ENTRY 1PRN2.0419.68132038321099.80.1630.186SAME AS WILD-TYPE34.1
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor18.9
p_staggered_tor15.9
p_scangle_it4.046
p_planar_tor3.7
p_scbond_it2.484
p_mcangle_it1.779
p_mcbond_it1.377
p_multtor_nbd0.241
p_singtor_nbd0.178
p_chiral_restr0.166
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor18.9
p_staggered_tor15.9
p_scangle_it4.046
p_planar_tor3.7
p_scbond_it2.484
p_mcangle_it1.779
p_mcbond_it1.377
p_multtor_nbd0.241
p_singtor_nbd0.178
p_chiral_restr0.166
p_hb_or_metal_coord0.152
p_xyhbond_nbd0.152
p_planar_d0.033
p_angle_d0.028
p_plane_restr0.0176
p_bond_d0.016
p_angle_deg
p_xhyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2153
Nucleic Acid Atoms
Solvent Atoms178
Heterogen Atoms42

Software

Software
Software NamePurpose
CCP4model building
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling
CCP4phasing