6PPO

Rhinovirus C15 complexed with domain I of receptor CDHR3


ELECTRON MICROSCOPY
Sample
Complex of rhinovirus C15 with domain I from human CDHR3
Sample Components
Rhinovirus C
domain I from human CDHR3
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification InstrumentGATAN CRYOPLUNGE 3
Cryogen NameNITROGEN
Sample Vitrification Details3s blotting time. Instrument placed in BSL2 hood.
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles14978
Reported Resolution (Å)3.2
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypePOINT
Map-Model Fitting and Refinement
Id1 (5K0U)
Refinement SpaceREAL
Refinement ProtocolAB INITIO MODEL
Refinement Target
Overall B Value100
Fitting Procedure
Details
Data Acquisition
Detector TypeGATAN K2 SUMMIT (4k x 4k)
Electron Dose (electrons/Å**2)32
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelFEI TITAN KRIOS
Minimum Defocus (nm)1000
Maximum Defocus (nm)3000
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS2.7
Imaging ModeBRIGHT FIELD
Specimen Holder ModelFEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification81000
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
IMAGE ACQUISITIONLeginon
CTF CORRECTIONCTFFIND4
MODEL FITTINGCoot
INITIAL EULER ASSIGNMENTJALIGN
FINAL EULER ASSIGNMENTJALIGN
CLASSIFICATIONRELION1.4
RECONSTRUCTIONJ3DR
MODEL REFINEMENTCoot
MODEL REFINEMENTPHENIX
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION22000