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TRK-A IN COMPLEX WITH LIGAND 1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277.15 pH 8.5
Crystal Properties Matthews coefficient Solvent content 2.55 51.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.052 α = 90 b = 52.052 β = 90 c = 227.917 γ = 120
Symmetry Space Group P 31 1 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2016-10-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.9999 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.06 75.97 97.9 0.04 18.3 2.9 21952
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.06 2.31 97.7 0.443 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.06 45.078 20215 1729 97.86 0.20218 0.19891 0.23866 0.237 RANDOM 49.695
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.31 0.16 0.31 -1.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.381 r_dihedral_angle_4_deg 16.64 r_dihedral_angle_3_deg 12.009 r_long_range_B_refined 8.198 r_long_range_B_other 8.145 r_scangle_other 6.176 r_dihedral_angle_1_deg 5.552 r_mcangle_it 4.72 r_mcangle_other 4.719 r_scbond_it 4.646
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.381 r_dihedral_angle_4_deg 16.64 r_dihedral_angle_3_deg 12.009 r_long_range_B_refined 8.198 r_long_range_B_other 8.145 r_scangle_other 6.176 r_dihedral_angle_1_deg 5.552 r_mcangle_it 4.72 r_mcangle_other 4.719 r_scbond_it 4.646 r_scbond_other 4.644 r_mcbond_it 3.447 r_mcbond_other 3.438 r_angle_refined_deg 1.287 r_angle_other_deg 0.948 r_chiral_restr 0.073 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2386 Nucleic Acid Atoms Solvent Atoms 110 Heterogen Atoms 35
Software Software Software Name Purpose XDS data reduction XSCALE data scaling REFMAC refinement