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Solution NMR structure of a quiet outer membrane protein G Nanopore (OmpG mutant: Delta-L6-D215)
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D HNCA 1 mM [U-13C; U-15N; U-2H] OmpG delta-L6-D215 mutant, 200 mM DPC, 25 mM Bis-Tris, 50 mM sodium chloride, 0.05 % w/v sodium azide 90% H2O/10% D2O 50 mM 6.3 1 atm 313 Bruker AVANCE III 800 2 3D HNCACB 1 mM [U-13C; U-15N; U-2H] OmpG delta-L6-D215 mutant, 200 mM DPC, 25 mM Bis-Tris, 50 mM sodium chloride, 0.05 % w/v sodium azide 90% H2O/10% D2O 50 mM 6.3 1 atm 313 Bruker AVANCE III 800 3 3D HNCO 1 mM [U-13C; U-15N; U-2H] OmpG delta-L6-D215 mutant, 200 mM DPC, 25 mM Bis-Tris, 50 mM sodium chloride, 0.05 % w/v sodium azide 90% H2O/10% D2O 50 mM 6.3 1 atm 313 Bruker AVANCE III 800 4 3D HN(CA)CO 1 mM [U-13C; U-15N; U-2H] OmpG delta-L6-D215 mutant, 200 mM DPC, 25 mM Bis-Tris, 50 mM sodium chloride, 0.05 % w/v sodium azide 90% H2O/10% D2O 50 mM 6.3 1 atm 313 Bruker AVANCE III 800 5 3D 15N-1H-1H NOESY-TROSY 1 mM [U-13C; U-15N; U-2H] OmpG delta-L6-D215 mutant, 200 mM DPC, 25 mM Bis-Tris, 50 mM sodium chloride, 0.05 % w/v sodium azide 90% H2O/10% D2O 50 mM 6.3 1 atm 313 Bruker AVANCE III 800 6 3D 15N-1H-15N HSQC-NOESY-HSQC 1 mM [U-13C; U-15N; U-2H] OmpG delta-L6-D215 mutant, 200 mM DPC, 25 mM Bis-Tris, 50 mM sodium chloride, 0.05 % w/v sodium azide 90% H2O/10% D2O 50 mM 6.3 1 atm 313 Bruker AVANCE III 800 7 2D 1H-15N HSQC 1 mM [U-13C; U-15N; U-2H] OmpG delta-L6-D215 mutant, 200 mM DPC, 25 mM Bis-Tris, 50 mM sodium chloride, 0.05 % w/v sodium azide 90% H2O/10% D2O 50 mM 6.3 1 atm 313 Bruker AVANCE III 800
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 800
NMR Refinement Method Details Software simulated annealing CNS
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment Sparky 3 Goddard and Kneller 2 structure calculation CNS 1.2 Brunger, Adams, Clore, Gros, Nilges and Read 3 data analysis NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax