6OEV

Structure of human Patched1 in complex with native Sonic Hedgehog


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.588
r_long_range_B_refined18.232
r_long_range_B_other18.231
r_dihedral_angle_3_deg17.44
r_dihedral_angle_4_deg12.989
r_mcangle_it11.995
r_mcangle_other11.994
r_scangle_other10.452
r_dihedral_angle_1_deg7.683
r_mcbond_it7.007
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.588
r_long_range_B_refined18.232
r_long_range_B_other18.231
r_dihedral_angle_3_deg17.44
r_dihedral_angle_4_deg12.989
r_mcangle_it11.995
r_mcangle_other11.994
r_scangle_other10.452
r_dihedral_angle_1_deg7.683
r_mcbond_it7.007
r_mcbond_other7.007
r_scbond_it5.718
r_scbond_other5.713
r_angle_refined_deg1.383
r_angle_other_deg1.187
r_chiral_restr0.066
r_gen_planes_refined0.005
r_bond_refined_d0.004
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Sample
Protein patched homolog 1, Sonic hedgehog protein
Specimen Preparation
Sample Aggregation StatePARTICLE
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles194633
Reported Resolution (Å)3.8
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypePOINT
Data Acquisition
Detector TypeGATAN K2 SUMMIT (4k x 4k)
Electron Dose (electrons/Å**2)1.6
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelFEI TITAN KRIOS
Minimum Defocus (nm)
Maximum Defocus (nm)
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeDARK FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
NONE