☰ Navigation Tabs
HUMAN PI3KDELTA IN COMPLEX WITH COMPOUND 6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 16.60 % PEG6000
0.10 M KCl
0.10 M MES pH=6.00
Crystal Properties Matthews coefficient Solvent content 2.65 53.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.017 α = 90 b = 108.981 β = 90 c = 142.394 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-10-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.00003 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.58 86.54 99.9 0.064 0.068 0.998 18.9 8.2 45261
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.58 2.83 99.8 0.541 0.578 0.992 4.28 8.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT NONE 2.58 86.54 41902 874 94.45 0.2596 0.2589 0.2476 0.296 0.2889 RANDOM 61.731
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.38 0.81 -1.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.588 r_dihedral_angle_4_deg 14.394 r_dihedral_angle_3_deg 12.563 r_dihedral_angle_1_deg 5.21 r_angle_refined_deg 1.022 r_angle_other_deg 0.926 r_chiral_restr 0.056 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.588 r_dihedral_angle_4_deg 14.394 r_dihedral_angle_3_deg 12.563 r_dihedral_angle_1_deg 5.21 r_angle_refined_deg 1.022 r_angle_other_deg 0.926 r_chiral_restr 0.056 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8987 Nucleic Acid Atoms Solvent Atoms 14 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction