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Crystal Structure of DAD2 bound to quinazolinone derivative
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4DNP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8.5 291 0.1M Tris/Acetate, 0.2M MgCl2, 31% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.28 45.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.63 α = 95.69 b = 56.83 β = 94.59 c = 68.8 γ = 108.74
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2016-02-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.9537 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.63 31.3 96 0.08 0.092 0.047 0.998 11.8 3.9 62194
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.63 1.66 94.6 0.609 0.705 0.354 0.757 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4DNP 1.63 29.37 56359 2954 91.53 0.1457 0.1438 0.1529 0.1818 0.1872 RANDOM 18.483
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.09 0.1 -0.02 -0.52 -0.08 0.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.841 r_dihedral_angle_4_deg 18.613 r_dihedral_angle_3_deg 13.222 r_dihedral_angle_1_deg 6.042 r_angle_refined_deg 1.947 r_angle_other_deg 1.594 r_chiral_restr 0.113 r_bond_refined_d 0.016 r_gen_planes_refined 0.012 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.841 r_dihedral_angle_4_deg 18.613 r_dihedral_angle_3_deg 13.222 r_dihedral_angle_1_deg 6.042 r_angle_refined_deg 1.947 r_angle_other_deg 1.594 r_chiral_restr 0.113 r_bond_refined_d 0.016 r_gen_planes_refined 0.012 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4154 Nucleic Acid Atoms Solvent Atoms 514 Heterogen Atoms 67
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Aimless data scaling PHASER phasing PDB_EXTRACT data extraction