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Crystal structure of Arabidopsis thaliana cytosolic triosephosphate isomerase C218Y mutant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 292 0.2 M Calcium acetate hydrate
0.1M Sodium cacodylate trihydrate 6.5
18 % w/v Polyethylene glycol 8,000
Crystal Properties Matthews coefficient Solvent content 2.85 56.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.38 α = 90 b = 97.211 β = 91.92 c = 68.148 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2017-06-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.9786 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.52 68.2 99.1 0.076 0.086 0.039 0.996 9.7 4.6 93845
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.52 1.55 98.1 0.28 0.316 0.145 0.953 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.52 68.2 88995 4834 99.11 0.1905 0.1895 0.2006 0.2082 0.2173 RANDOM 11.817
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.56 -0.61 -0.51 -1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.334 r_dihedral_angle_4_deg 13.445 r_dihedral_angle_3_deg 10.305 r_dihedral_angle_1_deg 6.072 r_angle_refined_deg 1.808 r_angle_other_deg 1.506 r_chiral_restr 0.103 r_bond_refined_d 0.016 r_gen_planes_refined 0.01 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.334 r_dihedral_angle_4_deg 13.445 r_dihedral_angle_3_deg 10.305 r_dihedral_angle_1_deg 6.072 r_angle_refined_deg 1.808 r_angle_other_deg 1.506 r_chiral_restr 0.103 r_bond_refined_d 0.016 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3699 Nucleic Acid Atoms Solvent Atoms 432 Heterogen Atoms 4
Software Software Software Name Purpose Aimless data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction xia2 data reduction