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Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5LZV
Sample Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK II Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 133480 Reported Resolution (Å) 3.4 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 (5LZV) Refinement Space REAL Refinement Protocol OTHER Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON II (4k x 4k) Electron Dose (electrons/Å**2) 40
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification Calibrated Magnification 104478 Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION RELION 2.0 IMAGE ACQUISITION EPU CTF CORRECTION Gctf MODEL FITTING Coot 0.8.9 INITIAL EULER ASSIGNMENT RELION 2.0 FINAL EULER ASSIGNMENT RELION 2.0 RECONSTRUCTION RELION 2.0 MODEL REFINEMENT PHENIX 1.13_2998
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION