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B. pseudomallei KatG crystalized in the presence of ABTS
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MWV PDBID 1MWV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.1 293 MPD, 0.1 M sodium citrate, 10 mM ABTS
Crystal Properties Matthews coefficient Solvent content 3.17 61.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.06 α = 90 b = 113.71 β = 90 c = 173.54 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD mirrors 2009-07-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.98 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 173.54 99.9 0.422 0.445 0.141 3.4 8.9 69168 69168
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 100 0.842 0.842 0.895 0.297 0.8 8.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDBID 1MWV 2.5 28.56 65537 3542 99.88 0.2128 0.2094 0.2178 0.2767 0.2812 RANDOM 33.504
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.78 8.71 -6.93
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.331 r_dihedral_angle_4_deg 16.402 r_dihedral_angle_3_deg 15.761 r_dihedral_angle_1_deg 8.126 r_angle_refined_deg 1.289 r_angle_other_deg 1.159 r_chiral_restr 0.046 r_gen_planes_refined 0.01 r_gen_planes_other 0.007 r_bond_refined_d 0.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.331 r_dihedral_angle_4_deg 16.402 r_dihedral_angle_3_deg 15.761 r_dihedral_angle_1_deg 8.126 r_angle_refined_deg 1.289 r_angle_other_deg 1.159 r_chiral_restr 0.046 r_gen_planes_refined 0.01 r_gen_planes_other 0.007 r_bond_refined_d 0.005 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10998 Nucleic Acid Atoms Solvent Atoms 1200 Heterogen Atoms 120
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction REFMAC phasing