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Structure of thioredoxin 1 from the thermophilic eubacterium Thermosipho africanus TCF52B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 289 0.2 M MgCl2 , 0.1 M bis-tris pH 6.5, 25%(w/v) PEG 3350
Crystal Properties Matthews coefficient Solvent content 1.67 26.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.454 α = 90 b = 41.023 β = 90 c = 55.822 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2015-12-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.9795 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 41.02 99.1 28.2 6.1 8989 25.4388546055
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 95 7.3 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT NONE 1.80013732031 33.0566043115 1.33595773055 8944 433 98.8396507901 0.212317242433 0.210661817761 0.2139 0.24563185947 0.2486 32.5232942362
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 11.2951731028 f_angle_d 0.84307574714 f_chiral_restr 0.0544356261178 f_bond_d 0.00623932333739 f_plane_restr 0.00405494837583
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 730 Nucleic Acid Atoms Solvent Atoms 21 Heterogen Atoms 11
Software Software Software Name Purpose autoPROC data collection SCALA data scaling PHENIX refinement